Package index • mNIRS

All functions

monoexp_init() SSmonoexp(): Initiate Self-Starting nls Monoexponential Model

create_mNIRS_data(): Create an mNIRS Dataframe with Metadata

downsample_data(): Downsample Data

filter_data(): Filter Data

filtfilt_edges(): Butterworth Filter with Better Edge Detection

print(<mNIRS.kinetics>) plot(<mNIRS.kinetics>): Methods for mNIRS.kinetics objects

mNIRS_palette(): Custom mNIRS colour palette

monoexponential(): Monoexponential Function with 4 Parameters

peak_slope(): Calculate Peak Positive or Negative Slope

plot(<mNIRS.data>): Plot mNIRS.data objects

prepare_kinetics_data(): Prepare mNIRS Data for Kinetics Analysis

process_kinetics(<monoexponential>) process_kinetics(<sigmoidal>) process_kinetics(<half_time>) process_kinetics(<peak_slope>): Fit Kinetics

read_data(): Read mNIRS Data From File

replace_invalid(): Replace Invalid Values

replace_missing(): Replace Missing Values

replace_outliers(): Replace Local Outliers

rescale_data(): Rescale Data Range

rolling_slope(): Calculate Rolling Slope

scale_colour_mNIRS() scale_fill_mNIRS(): Scales for custom mNIRS palette

shift_data(): Shift Data Range

theme_mNIRS(): Custom mNIRS ggplot2 theme